PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000256G0700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 154aa    MW: 16063.6 Da    PI: 11.3212
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000256G0700genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP56.41.2e-176498640
              TCP  6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLG 40
                      r+ ++hTkv+gR+RR+R+sa caar+F+L++eLG
  PH01000256G0700 64 PRNHDRHTKVEGRGRRIRMSAACAARIFQLTRELG 98
                     6899******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136910.74266120IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-136698IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEAQVQDKAE EEESARLHAQ PGGVGCGVAA AMAIGAIPMH SFIVPKPEPV EFFGGMAMIR  60
KPPPRNHDRH TKVEGRGRRI RMSAACAARI FQLTRELGPT GHGGARGLLP VIANPLLQSS  120
GGAAISVPSG LAPITATATP TRPRPSLRCL GHR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605362e-64AK060536.1 Oryza sativa Japonica Group cDNA clone:001-021-D02, full insert sequence.
GenBankAK1026662e-64AK102666.1 Oryza sativa Japonica Group cDNA clone:J033101L16, full insert sequence.
GenBankAK1196602e-64AK119660.1 Oryza sativa Japonica Group cDNA clone:002-130-H12, full insert sequence.
GenBankAP0046322e-64AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149642e-64AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-64CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankD872612e-64D87261.1 Oryza sativa Japonica Group mRNA for PCF2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664491.16e-38PREDICTED: LOW QUALITY PROTEIN: transcription factor PCF2
SwissprotQ6ZBH63e-39PCF2_ORYSJ; Transcription factor PCF2
SwissprotA2YXQ13e-39PCF2_ORYSI; Transcription factor PCF2
TrEMBLA0A096RPT81e-38A0A096RPT8_MAIZE; Uncharacterized protein
STRINGGRMZM2G107031_P013e-38(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-15TCP family protein